Publications — Riyue Bao

For a full list of publications, please check my google scholar profile.

Select Recent Publications

Molecular correlates and therapeutic targets in T cell-inflamed versus non-T cell-inflamed tumors across cancer types

Riyue Bao, Daniel Stapor, Jason J Luke

Genome medicine, 2020. 12(1):1-19

PD-1 Blockade in Chinese versus Western Patients with Melanoma

Alexander N Shoushtari, Riyue Bao, Jason J Luke

Clinical Cancer Research, 2020

Transcriptional analysis of metastatic uveal melanoma survival nominates NRP1 as a therapeutic target

Riyue Bao, Oliver Surriga, Daniel J Olson, Jacob B Allred, Carrie A Strand, Yuanyuan Zha, Timothy Carll, Brian W Labadie, Bruno R Bastos, Marcus Butler, David Hogg, Elgilda Musi, Grazia Ambrosini, Pamela Munster, Gary K Schwartz, Jason J Luke

Melanoma Research, 2020

Genomic signatures of globally enhanced gene duplicate accumulation in the megadiverse higher Diptera fueling intralocus sexual conflict resolution

Riyue Bao, Markus Friedrich

PeerJ, 2020. 8:e10012

ACE2 and TMPRSS2 expression by clinical, HLA, immune, and microbial correlates across 34 human cancers and matched normal tissues: implications for SARS-CoV-2 COVID-19

Riyue Bao, Kyle Hernandez, Lei Huang, Jason John Luke

Journal for ImmunoTherapy of Cancer, 2020. 8:e001020.

Evolutionary conservation of opsin gene expression patterns in the compound eyes of darkling beetles

Meng Wu, Riyue Bao, Markus Friedrich

Development Genes and Evolution, 2020. 230(5):339-345

Select Previous Publications

The commensal microbiome is associated with anti–PD-1 efficacy in metastatic melanoma patients

Vyara Matson*, Jessica Fessler*, Riyue Bao*, Tara Chongsuwat, Yuanyuan Zha, Maria-Luisa Alegre, Jason J Luke, Thomas F Gajewski. [*] Equal Contribution

Science, 2018. 359(6371):104-108

Interferon-β corrects massive gene dysregulation in multiple sclerosis: Short-term and long-term effects on immune regulation and neuroprotection

Xuan Feng*, Riyue Bao*, Lei Li, Florian Deisenhammer, Barry GW Arnason, Anthony T Reder. [*] Equal contribution.

EBioMedicine, 2019. 49:269-283

Healthy infants harbor intestinal bacteria that protect against food allergy

Taylor Feehley*, Catherine H Plunkett*, Riyue Bao*, Sung Min Choi Hong, Elliot Culleen, Pedro Belda-Ferre, Evelyn Campbell, Rosita Aitoro, Rita Nocerino, Lorella Paparo, Jorge Andrade, Dionysios A Antonopoulos, Roberto Berni Canani, Cathryn R Nagler. [*] Equal Contribution

Nature medicine, 2019. 25(3):448-453

Genome sequencing and transcriptome analyses of the Siberian hamster hypothalamus identify mechanisms for seasonal energy balance

Riyue Bao, Kenneth G Onishi, Elisabetta Tolla, Fran JP Ebling, Jo E Lewis, Richard L Anderson, Perry Barrett, Brian J Prendergast, Tyler J Stevenson

PNAS, 2019. 116(26):13116-13121

Melanoma-intrinsic β-catenin signalling prevents anti-tumour immunity

Stefani Spranger, Riyue Bao, Thomas F Gajewski

Nature, 2015. 523(7559):231-235

PD-L1 gene alterations identify a subset of diffuse large B-cell lymphoma harboring a T-cell–inflamed phenotype

James Godfrey, Sravya Tumuluru, Riyue Bao, Michael Leukam, Girish Venkataraman, John Phillip, Carrie Fitzpatrick, James McElherne, Brendan W MacNabb, Robert Orlowski, Sonali M Smith, Justin Kline.

Blood, 2019. 133(21):2279-2290

WNT/β-catenin pathway activation correlates with immune exclusion across human cancers

Jason J Luke, Riyue Bao, Randy F Sweis, Stefani Spranger, Thomas F Gajewski

Clinical Cancer Research, 2019. 25(10):3074-3083

Comparative evidence of an exceptional impact of gene duplication on the developmental evolution of Drosophila and the higher Diptera

Riyue Bao, Sammy E Dia, Hussein A Issa, Dalia Alhusein, Markus Friedrich

Frontiers in Ecology and Evolution, 2018. 6:63